杨军，博士、研究员，博士生导师。
2001年毕业于河北大学生物学专业并获学士学位；2006年获中国科学院水生生物研究所水生生物学专业博士学位；2006-2008年加拿大Dalhousie大学地球科学系Killam博士后；2008年11月至今，中国科学院城市环境研究所研究员，创建水生态健康研究组。团队秉持“团结、勤奋、求是、创新”的核心价值观，高度注重科研人才培养；截至2026年2月，累计培养博士后4名、博士18名（含国际生4名）、硕士12名。
2009年建立河流水库生态系统长期定位观测研究站，构建了完善的样品库、数据库和档案库。累计采集样品超过30,000份，形成了流程化、规范化、标准化的环境DNA（eDNA）样品采集与分析体系。率先发起“厦门水库时间序列计划（Xiamen Reservoir Time-series, XRT）”，并主导实施“厦门后溪长期生态研究计划（2011–2030年）”与“杏林湾水库十年计划（2016–2025年）”。
坚持以生态健康为视角，聚焦水生态安全和微食物网，研究饮用水水源地、景观水体等流域水环境与水生态问题，为水环境保护、生态修复和管理提供科学支撑。近年来，重点围绕供水水库尖头藻水华防控难题，研发早期监测、精准诊断、动态预警、应急处置、生态调控、资源开发等关键技术与装备。
承担科技部、基金委、中科院、福建省、厦门市等科研项目40余项；在ISME J、Microbiome、Water Res、Environ Sci Technol、Environ Int、Ecol Indic、Mol Ecol、Global Ecol Biogeogr、Limnol Oceanogr、Harmful Algae等环境与生态领域发表SCI论文150多篇，学术成果被SCI期刊引用超过7000次，获国内外同行的普遍认可，连续入选“全球高被引科学家”名单。授权发明专利3项、登记软件著作权3项。
http://orcid.org/0000-0002-7920-2777
http://www.researcherid.com/rid/E-6680-2011
https://www.scopus.com/authid/detail.uri?authorId=56183078800
水源地藻类水华防控；生物监测与生态评价；微生物生态过程与机制；水生态健康保障相关问题
福建省流域生态重点实验室主任，中国生态学学会淡水生态专业委员会副主任委员、中国生态学学会流域生态专业委员会委员、中国海洋湖沼学会湖泊分会常务理事、中国地理学会湖泊与湿地研究分会委员、中国地理学会人类世与湖泊生态研究工作组委员、中国动物学会原生动物学分会理事，福建省水生态环境专家库专家、厦门市检察机关公益诉讼专家辅助人、厦门市生态环境应急专家库专家。
《Microbiome》《Environmental Microbiome》副主编、《Diversity and Distributions》《Water Biology and Security》客座编辑、《Aquatic Ecology》《European Journal of Ecology》《iMeta》《Journal of Oceanology and Limnology》《Water》《水生生物学报》《湖泊科学》等期刊编委，作为大会主席组织召开了第6届国际有壳虫学术会议。
加拿大Killam奖、中国科学院院长奖、第12届国际原生动物学大会最佳报告奖、厦门市科学技术进步奖、福建水利科学技术奖，厦门市拔尖人才、中国科学院上海分院“身边优秀榜样”先进工作者、入选福建省百千万人才工程、厦门市高层次人才A类。
1. Mo YY, Xiao P, Liu LM, Zuo J, Chen HH, Jeppesen E, Chen GG, Gu X, Zhu Y-G, Yang J*. 2026. Climate change-driven dispersal of pathogenic bacteria in large-scale lakes and reservoirs. Environment International 208: 110060
2. Li SZ, Yan X, Chen HH, Jeppesen E, Xiao P, Jin L, Xu ZJ, Zuo J, Ren KX, Yang J*. 2025. Cyanobacterial blooms specifically alter the dispersal-mediated taxonomic and functional vertical similarity of microbial communities in a subtropical reservoir. Water Research 281: 123574
3. Sha ZS, Chen HH, Jin L, Zheng QP, Lu YF, Sido MY, Willis A, Liu CQ*, Yang J*. 2025. Evidence of global dispersal of the harmful cyanobacterium, Raphidiopsis raciborskii, in lentic freshwaters through migratory waterbirds. Harmful Algae 142: 102786
4. Chen HH#, Luo AQ#, Mi CX, Lu YF, Xue YY, Jin L, Zhang HT, Yang J*. 2024. Climate-driven decline in water level causes earlier onset of hypoxia in a subtropical reservoir. Water Research 267: 122445
5. Yan X, Li SZ*, Abdullah Al M, Mo YY, Zuo J, Grossart HP, Zhang HT, Yang YG, Jeppesen J, Yang J*. 2024. Community stability of free-living and particle-attached bacteria in a subtropical reservoir with salinity fluctuation over 3 years. Water Research 254: 121344
6. Zuo J, Xiao P, Heino J, Tan FJ, Soininen J, Chen HH, Yang J*. 2024. Eutrophication increases the similarity of cyanobacterial community features in lakes and reservoirs. Water Research 250: 120977
7. Li SZ#, Yan X#, Abdullah Al M, Ren KX, Rensing C, Hu AY, Tsyganov AN, Mazei Y, Smirnov A, Mazei N, Yang J*. 2024. Ecological and evolutionary processes involved in shaping microbial habitat generalists and specialists in urban park ecosystems. mSystems 9: e00469-24
8. Yu YS#, Li YP#, Ren KX, Hao XL, Chi Fru E, Rønn R, Rivera WL, Becker K, Feng RW, Yang J*, Rensing C*. 2024. A brief history of metal recruitment in protozoan predation. Trends in Microbiology 32(5): 465–476
9. Ren KX#, Mo YY#, Xiao P, Rønn R, Xu ZJ, Xue YY, Chen HH, Rivera WL, Rensing C*, Yang J*. 2024. Microeukaryotic plankton evolutionary constraints in a subtropical river explained by environment and bacteria along differing taxonomic resolutions. ISME Communications 4: ycae026
10. Abdullah Al M, Chen HH, Yan X, Ren KX, Xue YY, Shimeta J, Majaneva M, Wilkinson DM, Yang J*. 2024. Relic DNA confounds the results of DNA-based study on microeukaryotic succession in aquatic biofilms. Ecological Indicators 158: 111350
11. Jin L, Chen HH, Matsuzaki SIS, Shinohara R, Wilkinson DM, Yang J*. 2023. Tipping points of nitrogen use efficiency in freshwater phytoplankton along trophic state gradient. Water Research 245: 120639
12. Zuo J, Liu LM, Xiao P, Xu ZJ, Wilkinson DM, Grossart H-P, Chen HH, Yang J*. 2023. Patterns of bacterial generalists and specialists in lakes and reservoirs along a latitudinal gradient. Global Ecology and Biogeography 32: 2017–2032
13. Xue YY, Abdullah Al M, Chen HH, Xiao P, Zhang HT, Jeppesen E, Yang J*. 2023. Relic DNA obscures DNA-based profiling of multiple microbial taxonomic groups in a river-reservoir ecosystem. Molecular Ecology 32: 4940–4952
14. Zuo J, Tan FJ, Zhang HT, Xue YY, Grossart H-P, Jeppesen E, Xiao P, Chen HH, Yang J*. 2022. Interaction between Raphidiopsis raciborskii and rare bacterial species revealed by dilution-to-extinction experiments. Harmful Algae 120: 102350
15. Isabwe A, Yang JR, Wang YM, Wilkinson DM, Graham EB, Chen HH, Yang J*. 2022. Riverine bacterioplankton and phytoplankton assembly along an environmental gradient induced by urbanization. Limnology and Oceanography 67: 1943–1958
16. Xue YY, Liu M, Chen HH, Jeppesen E, Zhang HT, Ren KX, Yang J*. 2022. Microbial hierarchical correlations and their contributions to carbon-nitrogen cycling following a reservoir cyanobacterial bloom. Ecological Indicators 143: 109401
17. Gao XF#, Wang WP#, Ndayishimiye JC#, Govaert L, Chen HH, Jeppesen E, Xue YY, Yu XQ, Yang J*. 2022. Invasive and toxic cyanobacteria regulate allochthonous resource use and community niche width of reservoir zooplankton. Freshwater Biology 67: 1344–1356
18. Abdullah Al M, Xue YY, Xiao P, Xu J, Chen HH, Mo YY, Shimeta J, Yang J*. 2022. Community assembly of microbial habitat generalists and specialists in urban aquatic ecosystems explained more by habitat type than pollution gradient. Water Research 220: 118693
19. Yang YG, Chen HH, Abdullah Al M, Ndayishimiye JC, Yang JR, Isabwe A, Luo AQ, Yang J*. 2022. Urbanization reduces resource use efficiency of phytoplankton community by altering the environment and decreasing biodiversity. Journal of Environmental Sciences 112: 140–15
20. Tan FJ, Xiao P, Yang JR, Chen HH, Jin L, Yang YG, Lin TF, Willis A, Yang J*. 2021. Precision early detection of invasive and toxic cyanobacteria: a case study of Raphidiopsis raciborskii. Harmful Algae 110: 102125
21. Mo YY, Peng F, Gao XF, Xiao P, Logares R, Jeppesen E, Ren KX, Xue YY, Yang J*. 2021. Low shifts in salinity determined assembly processes and network stability of microeukaryotic plankton communities in a subtropical urban reservoir. Microbiome 9: 128
22. Mo YY, Zhang WJ, Wilkinson DM, Yu Z, Xiao P, Yang J*. 2021. Biogeography and co-occurrence patterns of bacterial generalists and specialists in three subtropical marine bays. Limnology and Oceanography 66: 793–806
23. Gao XF, Chen HH, Gu BH, Jeppesen E, Xue YY, Yang J*. 2021. Particulate organic matter as causative factor to eutrophication of subtropical deep freshwater: role of typhoon (tropical cyclone) in the nutrient cycling. Water Research 188: 116470
24. Wang WP, Ren KX, Chen HH, Gao XF, Rønn R, Yang J*. 2020. Seven-year dynamics of testate amoeba communities driven more by stochastic than deterministic processes in two subtropical reservoirs. Water Research 185: 116232
25. Peng F, Guo YY, Isabwe A, Chen HH, Wang YM, Zhang YP, Zhu ZX, Yang J*. 2020. Urbanization drives riverine bacterial antibiotic resistome more than taxonomic community at watershed scale. Environment International 137: 105524
26. Chen WD, Ren KX, Isabwe A, Chen HH, Liu M, Yang J*. 2019. Stochastic processes shape microeukaryotic community assembly in a subtropical river across wet and dry seasons. Microbiome 7: 138
27. Liu LM, Chen HH, Liu M, Yang JR, Xiao P, Wilkinson DM, Yang J*. 2019. Response of the eukaryotic plankton community to the cyanobacterial biomass cycle over 6 years in two subtropical reservoirs. The ISME Journal 13: 2196–2208
28. Ren KX, Xue YY, Rønn R, Liu LM, Chen HH, Rensing C*, Yang J*. 2018. Dynamics and determinants of amoeba community, occurrence and abundance in subtropical reservoirs and rivers. Water Research 146: 177–186
29. Xue YY, Chen HH, Yang JR, Liu M, Huang BQ, Yang J*. 2018. Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom. The ISME Journal 12: 2263–2277
30. Mo YY, Zhang WJ*, Yang J*, Lin YS, Yu Z, Lin SJ. 2018. Biogeographic patterns of abundant and rare bacterioplankton in three subtropical bays resulting from selective and neutral processes. The ISME Journal 12: 2198–2210
31. Liu LM#, Su JQ#, Guo YY#, Wilkinson DM, Liu ZW, Zhu Y-G, Yang J*. 2018. Large-scale biogeographical patterns of bacterial antibiotic resistome in the waterbodies of China. Environment International 117: 292–299
32. Guo YY, Liu M, Liu LM, Liu X, Chen HH, Yang J*. 2018. The antibiotic resistome of free-living and particle-attached bacteria under a reservoir cyanobacterial bloom. Environment International 117: 107–115
33. Yang JR, Lv H, Isabwe A, Liu LM, Yu XQ, Chen HH, Yang J*. 2017. Disturbance-induced phytoplankton regime shifts and recovery of cyanobacteria dominance in two subtropical reservoirs. Water Research 120: 52–63
34. Liu LM, Liu M, Wilkinson DM, Chen HH, Yu XQ, Yang J*. 2017. DNA metabarcoding reveals that 200 µm size-fractionated filtering is unable to discriminate between planktonic microbial and large eukaryotes. Molecular Ecology Resources 17: 991–1002
35. Yang J, Lv H, Yang J*, Liu LM, Yu XQ, Chen HH. 2016. Decline in water level boosts cyanobacteria dominance in subtropical reservoirs. Science of the Total Environment 557/558: 445–452
36. Liu LM#, Yang J#, Lv H#, Yu XQ, Wilkinson DM, Yang J*. 2015. Phytoplankton communities exhibit a stronger response to environmental changes than bacterioplankton in three subtropical reservoirs. Environmental Science & Technology 49(18): 10850–10858
37. Liu LM, Yang J*, Yu Z, Wilkinson DM. 2015. The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China. The ISME Journal 9: 2068–2077
38. 杨军, 厉舒祯, 薛媛媛, 陈辉煌. 2025. 一种基于环境DNA技术检测湖库活体真核浮游生物的方法及其应用. 专利号: ZL 2024 1 1933445.5
39. 杨军, 谭凤娇, 肖鹏. 2022. 一种同时检测水华蓝藻拉氏尖头藻和产拟柱胞藻毒素特异基因的试剂盒及其方法. 专利号：ZL 2020 1 1232085.8
40. 杨军, 王文平, 任可欣. 2020. 一种砂壳虫的分离与培养技术. 专利号： ZL 2018 1 0255574.1
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3.国家自然科学基金联合基金重点支持项目：拉氏尖头藻入侵驱动闽台河流水库生态退化关键过程及其生态恢复机制（U25A20638）。2026.01-2029.12。主持，在研。
4.国家自然科学基金国际(地区)合作与交流项目：中俄城市公园生态系统变形虫群落构建机制研究（32361133557）。2024.01-2026.12。主持，在研。
5.国家自然科学基金重大研究计划集成项目：典型海陆交汇关键带微生物驱动碳氮硫循环的机制与碳源汇效应集成研究（92251306）。2023.01-2024.12。参加，完成。
6.中国科学院“美丽中国生态文明建设科技工程”A类战略性先导科技专项子课题：长江经济带干流典型城市群水环境效应与黑臭水体治理关键技术(XDA23040302)。2019.01-2023.12。主持，完成。
